IL_6ORD_129

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

6ORD|1|RA|G|1801, 6ORD|1|RA|G|1816, 6ORD|1|RA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORD_129 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0664

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6ORD|1|RA|U|1798
6ORD|1|RA|G|1799
6ORD|1|RA|C|1800
6ORD|1|RA|G|1801
6ORD|1|RA|A|1802
6ORD|1|RA|A|1803
6ORD|1|RA|C|1804
*
6ORD|1|RA|G|1813
6ORD|1|RA|G|1814
6ORD|1|RA|A|1815
6ORD|1|RA|G|1816
6ORD|1|RA|G|1817
6ORD|1|RA|U|1818
6ORD|1|RA|A|1819
6ORD|1|RA|U|1820
6ORD|1|RA|A|1821

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2