IL_6ORD_143

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORD_143 not in the Motif Atlas

Geometric match to IL_5MWI_008

Geometric discrepancy: 0.1825

The information below is about IL_5MWI_008

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

259

Unit IDs

6ORD|1|RA|C|2108
6ORD|1|RA|U|2109
6ORD|1|RA|G|2110
*
6ORD|1|RA|C|2179
6ORD|1|RA|U|2180
6ORD|1|RA|G|2181

Current chains

Chain RA

23S rRNA

Nearby chains