3D structure

PDB id
6ORD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GGAAGAAG*UGUAAAC
Length
15 nucleotides
Bulged bases
6ORD|1|XA|A|412
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ORD_191 not in the Motif Atlas
Homologous match to IL_4LFB_017
Geometric discrepancy: 0.0949
The information below is about IL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28026.3
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

6ORD|1|XA|G|409
6ORD|1|XA|G|410
6ORD|1|XA|A|411
6ORD|1|XA|A|412
6ORD|1|XA|G|413
6ORD|1|XA|A|414
6ORD|1|XA|A|415
6ORD|1|XA|G|416
*
6ORD|1|XA|U|427
6ORD|1|XA|G|428
6ORD|1|XA|U|429
6ORD|1|XA|A|430
6ORD|1|XA|A|431
6ORD|1|XA|A|432
6ORD|1|XA|C|433

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XD
30S ribosomal protein S4

Coloring options:


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