IL_6ORD_258

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

6ORD|1|YA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORD_258 not in the Motif Atlas

Geometric match to IL_7RQB_025

Geometric discrepancy: 0.0886

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6ORD|1|YA|C|844
6ORD|1|YA|G|845
6ORD|1|YA|C|846
*
6ORD|1|YA|G|931
6ORD|1|YA|G|932
6ORD|1|YA|A|933
6ORD|1|YA|G|934

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y3

50S ribosomal protein L30