IL_6ORD_276

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6ORD|1|YA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORD_276 not in the Motif Atlas

Geometric match to IL_4V88_397

Geometric discrepancy: 0.3476

The information below is about IL_4V88_397

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6ORD|1|YA|G|1087
6ORD|1|YA|A|1088
6ORD|1|YA|G|1089
6ORD|1|YA|U|1090
6ORD|1|YA|G|1091
*
6ORD|1|YA|C|1100
6ORD|1|YA|U|1101
6ORD|1|YA|C|1102

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y9

50S ribosomal protein L36