3D structure

PDB id
6ORD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GAGUG*CUC
Length
8 nucleotides
Bulged bases
6ORD|1|YA|A|1088
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ORD_276 not in the Motif Atlas
Geometric match to IL_4V88_397
Geometric discrepancy: 0.3476
The information below is about IL_4V88_397
Detailed Annotation
Major groove platform with extra cWW
Broad Annotation
No text annotation
Motif group
IL_63959.1
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
18

Unit IDs

6ORD|1|YA|G|1087
6ORD|1|YA|A|1088
6ORD|1|YA|G|1089
6ORD|1|YA|U|1090
6ORD|1|YA|G|1091
*
6ORD|1|YA|C|1100
6ORD|1|YA|U|1101
6ORD|1|YA|C|1102

Current chains

Chain YA
23S rRNA

Nearby chains

Chain Y9
50S ribosomal protein L36

Coloring options:


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