IL_6ORD_309

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAAA(5MU)UC(5MC)UUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

6ORD|1|YA|A|1938, 6ORD|1|YA|U|1944, 6ORD|1|YA|U|1963

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORD_309 not in the Motif Atlas

Homologous match to IL_7RQB_077

Geometric discrepancy: 0.0678

The information below is about IL_7RQB_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6ORD|1|YA|C|1934
6ORD|1|YA|G|1935
6ORD|1|YA|A|1936
6ORD|1|YA|A|1937
6ORD|1|YA|A|1938
6ORD|1|YA|5MU|1939
6ORD|1|YA|U|1940
6ORD|1|YA|C|1941
6ORD|1|YA|5MC|1942
6ORD|1|YA|U|1943
6ORD|1|YA|U|1944
6ORD|1|YA|G|1945
*
6ORD|1|YA|C|1961
6ORD|1|YA|5MC|1962
6ORD|1|YA|U|1963
6ORD|1|YA|G|1964

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XA

Small subunit ribosomal RNA; SSU rRNA

Chain XY

Transfer RNA; tRNA

Chain YD

50S ribosomal protein L2