IL_6ORD_309
3D structure
- PDB id
- 6ORD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAA(5MU)UC(5MC)UUG*C(5MC)UG
- Length
- 16 nucleotides
- Bulged bases
- 6ORD|1|YA|A|1938, 6ORD|1|YA|U|1944, 6ORD|1|YA|U|1963
- QA status
- Modified nucleotides: 5MU, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6ORD_309 not in the Motif Atlas
- Homologous match to IL_7RQB_077
- Geometric discrepancy: 0.0678
- The information below is about IL_7RQB_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6ORD|1|YA|C|1934
6ORD|1|YA|G|1935
6ORD|1|YA|A|1936
6ORD|1|YA|A|1937
6ORD|1|YA|A|1938
6ORD|1|YA|5MU|1939
6ORD|1|YA|U|1940
6ORD|1|YA|C|1941
6ORD|1|YA|5MC|1942
6ORD|1|YA|U|1943
6ORD|1|YA|U|1944
6ORD|1|YA|G|1945
*
6ORD|1|YA|C|1961
6ORD|1|YA|5MC|1962
6ORD|1|YA|U|1963
6ORD|1|YA|G|1964
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain XY
- Transfer RNA; tRNA
- Chain YD
- 50S ribosomal protein L2
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