3D structure

PDB id
6ORD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CGAAA(5MU)UC(5MC)UUG*C(5MC)UG
Length
16 nucleotides
Bulged bases
6ORD|1|YA|A|1938, 6ORD|1|YA|U|1944, 6ORD|1|YA|U|1963
QA status
Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ORD_309 not in the Motif Atlas
Homologous match to IL_7RQB_077
Geometric discrepancy: 0.0678
The information below is about IL_7RQB_077
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6ORD|1|YA|C|1934
6ORD|1|YA|G|1935
6ORD|1|YA|A|1936
6ORD|1|YA|A|1937
6ORD|1|YA|A|1938
6ORD|1|YA|5MU|1939
6ORD|1|YA|U|1940
6ORD|1|YA|C|1941
6ORD|1|YA|5MC|1942
6ORD|1|YA|U|1943
6ORD|1|YA|U|1944
6ORD|1|YA|G|1945
*
6ORD|1|YA|C|1961
6ORD|1|YA|5MC|1962
6ORD|1|YA|U|1963
6ORD|1|YA|G|1964

Current chains

Chain YA
23S rRNA

Nearby chains

Chain XA
Small subunit ribosomal RNA; SSU rRNA
Chain XY
Transfer RNA; tRNA
Chain YD
50S ribosomal protein L2

Coloring options:


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