IL_6ORD_358

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORD_358 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0695

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6ORD|1|RA|G|1666
6ORD|1|RA|G|1667
6ORD|1|RA|A|1668
6ORD|1|RA|A|1669
6ORD|1|RA|C|1670
6ORD|1|RA|U|1671
6ORD|1|RA|C|1672
6ORD|1|RA|U|1673
6ORD|1|RA|G|1674
*
6ORD|1|RA|C|1990
6ORD|1|RA|U|1991
6ORD|1|RA|G|1992
6ORD|1|RA|U|1993
6ORD|1|RA|C|1994

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RO

50S ribosomal protein L14