IL_6ORD_364

3D structure

PDB id

6ORD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GU(5MC)*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORD_364 not in the Motif Atlas

Homologous match to IL_4LFB_069

Geometric discrepancy: 0.0982

The information below is about IL_4LFB_069

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6ORD|1|XA|G|1405
6ORD|1|XA|U|1406
6ORD|1|XA|5MC|1407
*
6ORD|1|XA|G|1494
6ORD|1|XA|U|1495
6ORD|1|XA|C|1496

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XX

mRNA

Chain XY

Transfer RNA; tRNA

Chain YA

Large subunit ribosomal RNA; LSU rRNA