3D structure

PDB id
6ORD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to cognate 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GCUAG*CAAAC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ORD_368 not in the Motif Atlas
Homologous match to IL_5J7L_274
Geometric discrepancy: 0.2366
The information below is about IL_5J7L_274
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

6ORD|1|YA|G|875
6ORD|1|YA|C|876
6ORD|1|YA|U|877
6ORD|1|YA|A|878
6ORD|1|YA|G|879
*
6ORD|1|YA|C|898
6ORD|1|YA|A|899
6ORD|1|YA|A|900
6ORD|1|YA|A|901
6ORD|1|YA|C|902

Current chains

Chain YA
23S rRNA

Nearby chains

Chain XY
Transfer RNA; tRNA
Chain YQ
50S ribosomal protein L16
Chain YZ
50S ribosomal protein L25

Coloring options:


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