IL_6ORE_128

3D structure

PDB id

6ORE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Release complex 70S

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORE_128 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0778

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6ORE|1|2|U|409
6ORE|1|2|G|410
6ORE|1|2|A|411
6ORE|1|2|A|412
6ORE|1|2|G|413
6ORE|1|2|A|414
6ORE|1|2|A|415
6ORE|1|2|G|416
*
6ORE|1|2|U|427
6ORE|1|2|G|428
6ORE|1|2|U|429
6ORE|1|2|A|430
6ORE|1|2|A|431
6ORE|1|2|A|432
6ORE|1|2|G|433

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4