IL_6ORL_009

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORL_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.5739

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6ORL|1|1|C|274
6ORL|1|1|C|275
6ORL|1|1|U|276
6ORL|1|1|G|277
6ORL|1|1|A|278
6ORL|1|1|A|279
6ORL|1|1|U|280
6ORL|1|1|C|281
*
6ORL|1|1|G|359
6ORL|1|1|U|360
6ORL|1|1|G|361
6ORL|1|1|A|362
6ORL|1|1|G|363

Current chains

Chain 1

23S ribosomal RNA

Nearby chains