IL_6ORL_051

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGC*GUCCC

Length

9 nucleotides

Bulged bases

6ORL|1|1|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORL_051 not in the Motif Atlas

Geometric match to IL_3NDB_001

Geometric discrepancy: 0.3438

The information below is about IL_3NDB_001

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6ORL|1|1|G|1448
6ORL|1|1|G|1449
6ORL|1|1|G|1450
6ORL|1|1|C|1451
*
6ORL|1|1|G|1459
6ORL|1|1|U|1460
6ORL|1|1|C|1461
6ORL|1|1|C|1462
6ORL|1|1|C|1463

Current chains

Chain 1

23S ribosomal RNA

Nearby chains