IL_6ORL_065

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6ORL|1|1|A|1801, 6ORL|1|1|C|1816, 6ORL|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORL_065 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0996

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6ORL|1|1|U|1798
6ORL|1|1|G|1799
6ORL|1|1|C|1800
6ORL|1|1|A|1801
6ORL|1|1|A|1802
6ORL|1|1|A|1803
6ORL|1|1|C|1804
*
6ORL|1|1|G|1813
6ORL|1|1|G|1814
6ORL|1|1|A|1815
6ORL|1|1|C|1816
6ORL|1|1|G|1817
6ORL|1|1|U|1818
6ORL|1|1|A|1819
6ORL|1|1|U|1820
6ORL|1|1|A|1821

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2