IL_6ORL_123

3D structure

PDB id

6ORL (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 pre-accommodated 70S complex at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ORL_123 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.2119

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6ORL|1|2|U|409
6ORL|1|2|G|410
6ORL|1|2|A|411
6ORL|1|2|A|412
6ORL|1|2|G|413
6ORL|1|2|A|414
6ORL|1|2|A|415
6ORL|1|2|G|416
*
6ORL|1|2|U|427
6ORL|1|2|G|428
6ORL|1|2|U|429
6ORL|1|2|A|430
6ORL|1|2|A|431
6ORL|1|2|A|432
6ORL|1|2|G|433

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4