3D structure

PDB id
6ORL (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF1 pre-accommodated 70S complex at 24 ms
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GU(5MC)AC*GAAGUC
Length
11 nucleotides
Bulged bases
6ORL|1|2|A|1492
QA status
Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6ORL_164 not in the Motif Atlas
Homologous match to IL_6CZR_167
Geometric discrepancy: 0.5124
The information below is about IL_6CZR_167
Detailed Annotation
Partly complementary
Broad Annotation
Partly complementary
Motif group
IL_49751.3
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
18

Unit IDs

6ORL|1|2|G|1405
6ORL|1|2|U|1406
6ORL|1|2|5MC|1407
6ORL|1|2|A|1408
6ORL|1|2|C|1409
*
6ORL|1|2|G|1491
6ORL|1|2|A|1492
6ORL|1|2|A|1493
6ORL|1|2|G|1494
6ORL|1|2|U|1495
6ORL|1|2|C|1496

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain 4
mRNA
Chain A
Peptide chain release factor 1
Chain q
30S ribosomal protein S12

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