IL_6OSI_019

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

6OSI|1|QA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_019 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1718

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6OSI|1|QA|G|409
6OSI|1|QA|G|410
6OSI|1|QA|A|411
6OSI|1|QA|A|412
6OSI|1|QA|G|413
6OSI|1|QA|A|414
6OSI|1|QA|A|415
6OSI|1|QA|G|416
*
6OSI|1|QA|U|427
6OSI|1|QA|G|428
6OSI|1|QA|U|429
6OSI|1|QA|A|430
6OSI|1|QA|A|431
6OSI|1|QA|A|432
6OSI|1|QA|C|433

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain YI

50S ribosomal protein L9