IL_6OSI_033

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

GGGAGC*GUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_033 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.265

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6OSI|1|QA|G|774
6OSI|1|QA|G|775
6OSI|1|QA|G|776
6OSI|1|QA|A|777
6OSI|1|QA|G|778
6OSI|1|QA|C|779
*
6OSI|1|QA|G|803
6OSI|1|QA|U|804
6OSI|1|QA|C|805

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QK

30S ribosomal protein S11

Chain RA

Large subunit ribosomal RNA; LSU rRNA

Chain RD

50S ribosomal protein L2