IL_6OSI_097

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

6OSI|1|RA|U|1142|||A, 6OSI|1|RA|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_097 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1591

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6OSI|1|RA|C|1018
6OSI|1|RA|U|1019
6OSI|1|RA|A|1020
6OSI|1|RA|A|1021
6OSI|1|RA|G|1022
6OSI|1|RA|U|1023
6OSI|1|RA|G|1024
*
6OSI|1|RA|C|1140
6OSI|1|RA|U|1141
6OSI|1|RA|U|1142|||A
6OSI|1|RA|A|1142|||B
6OSI|1|RA|A|1143
6OSI|1|RA|G|1144

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6

Chain RN

50S ribosomal protein L13