IL_6OSI_126

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6OSI|1|RA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_126 not in the Motif Atlas

Homologous match to IL_5J7L_308

Geometric discrepancy: 0.1557

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6OSI|1|RA|C|1686
6OSI|1|RA|G|1687
6OSI|1|RA|U|1688
6OSI|1|RA|A|1689
6OSI|1|RA|A|1690
6OSI|1|RA|C|1691
*
6OSI|1|RA|G|1696
6OSI|1|RA|G|1697
6OSI|1|RA|A|1698
6OSI|1|RA|G|1699
6OSI|1|RA|A|1700
6OSI|1|RA|A|1701
6OSI|1|RA|G|1702

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2