IL_6OSI_152

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_152 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1981

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6OSI|1|RA|C|2466
6OSI|1|RA|C|2467
6OSI|1|RA|G|2468
6OSI|1|RA|A|2469
6OSI|1|RA|G|2470
*
6OSI|1|RA|C|2480
6OSI|1|RA|G|2481
6OSI|1|RA|G|2482
6OSI|1|RA|C|2483
6OSI|1|RA|G|2484

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RQ

50S ribosomal protein L16

Chain RZ

50S ribosomal protein L25