IL_6OSI_167

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_167 not in the Motif Atlas

Homologous match to IL_5J7L_354

Geometric discrepancy: 0.1617

The information below is about IL_5J7L_354

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_70411.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

6OSI|1|RA|U|2847
6OSI|1|RA|G|2848
6OSI|1|RA|U|2849
6OSI|1|RA|A|2850
6OSI|1|RA|A|2851
6OSI|1|RA|G|2852
*
6OSI|1|RA|U|2865
6OSI|1|RA|U|2866
6OSI|1|RA|G|2867
6OSI|1|RA|A|2868
6OSI|1|RA|G|2869

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RR

50S ribosomal protein L17

Chain RT

50S ribosomal protein L19