IL_6OSI_226

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_226 not in the Motif Atlas

Homologous match to IL_4LFB_062

Geometric discrepancy: 0.1868

The information below is about IL_4LFB_062

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.5

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

7

Unit IDs

6OSI|1|XA|C|1431
6OSI|1|XA|G|1432
6OSI|1|XA|A|1433
6OSI|1|XA|A|1434
6OSI|1|XA|G|1435
*
6OSI|1|XA|C|1466
6OSI|1|XA|G|1467
6OSI|1|XA|A|1468
6OSI|1|XA|G|1469

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20

Chain YA

Large subunit ribosomal RNA; LSU rRNA

Chain YT

50S ribosomal protein L19