IL_6OSI_245

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6OSI|1|YA|G|801, 6OSI|1|YA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_245 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.1469

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

6OSI|1|YA|G|674
6OSI|1|YA|A|675
6OSI|1|YA|A|676
6OSI|1|YA|A|677
6OSI|1|YA|C|678
*
6OSI|1|YA|G|799
6OSI|1|YA|A|800
6OSI|1|YA|G|801
6OSI|1|YA|A|802
6OSI|1|YA|U|803
6OSI|1|YA|A|804
6OSI|1|YA|G|805
6OSI|1|YA|C|806

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YF

50S ribosomal protein L4

Chain YP

50S ribosomal protein L15