IL_6OSI_262

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

6OSI|1|YA|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_262 not in the Motif Atlas

Homologous match to IL_4WF9_035

Geometric discrepancy: 0.1984

The information below is about IL_4WF9_035

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

6OSI|1|YA|C|994
6OSI|1|YA|C|995
6OSI|1|YA|A|996
*
6OSI|1|YA|U|1159
6OSI|1|YA|G|1160

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y3

50S ribosomal protein L30

Chain YN

50S ribosomal protein L13

Chain YU

50S ribosomal protein L20

Chain YV

50S ribosomal protein L21