IL_6OSI_321

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

6OSI|1|YA|G|2576, 6OSI|1|YA|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_321 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.12

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

6OSI|1|YA|C|2510
6OSI|1|YA|U|2511
6OSI|1|YA|C|2512
*
6OSI|1|YA|G|2574
6OSI|1|YA|C|2575
6OSI|1|YA|G|2576
6OSI|1|YA|A|2577
6OSI|1|YA|G|2578

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y5

50S ribosomal protein L32

Chain YE

50S ribosomal protein L3