IL_6OSI_334

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6OSI|1|YB|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_334 not in the Motif Atlas

Homologous match to IL_4V9F_101

Geometric discrepancy: 0.2444

The information below is about IL_4V9F_101

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

6OSI|1|YB|C|17
6OSI|1|YB|G|18
*
6OSI|1|YB|C|65
6OSI|1|YB|A|66
6OSI|1|YB|G|67

Current chains

Chain YB

5S rRNA

Nearby chains

Chain YA

Large subunit ribosomal RNA; LSU rRNA

Chain YZ

50S ribosomal protein L25