IL_6OSI_365

3D structure

PDB id

6OSI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (near cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

4.14 Å

Loop

Sequence

GUCAC*GAAGUC

Length

11 nucleotides

Bulged bases

6OSI|1|XA|A|1492, 6OSI|1|XA|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSI_365 not in the Motif Atlas

Homologous match to IL_6CZR_167

Geometric discrepancy: 0.5389

The information below is about IL_6CZR_167

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6OSI|1|XA|G|1405
6OSI|1|XA|U|1406
6OSI|1|XA|C|1407
6OSI|1|XA|A|1408
6OSI|1|XA|C|1409
*
6OSI|1|XA|G|1491
6OSI|1|XA|A|1492
6OSI|1|XA|A|1493
6OSI|1|XA|G|1494
6OSI|1|XA|U|1495
6OSI|1|XA|C|1496

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain YA

Large subunit ribosomal RNA; LSU rRNA