3D structure

PDB id
6OSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF1 accommodated 70S complex at 60 ms
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
UGAAGAAG*UGUAAAG
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OSK_127 not in the Motif Atlas
Homologous match to IL_4LFB_017
Geometric discrepancy: 0.1368
The information below is about IL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_28026.3
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

6OSK|1|2|U|409
6OSK|1|2|G|410
6OSK|1|2|A|411
6OSK|1|2|A|412
6OSK|1|2|G|413
6OSK|1|2|A|414
6OSK|1|2|A|415
6OSK|1|2|G|416
*
6OSK|1|2|U|427
6OSK|1|2|G|428
6OSK|1|2|U|429
6OSK|1|2|A|430
6OSK|1|2|A|431
6OSK|1|2|A|432
6OSK|1|2|G|433

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain i
30S ribosomal protein S4

Coloring options:


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