IL_6OSK_127

3D structure

PDB id

6OSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 accommodated 70S complex at 60 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSK_127 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1368

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6OSK|1|2|U|409
6OSK|1|2|G|410
6OSK|1|2|A|411
6OSK|1|2|A|412
6OSK|1|2|G|413
6OSK|1|2|A|414
6OSK|1|2|A|415
6OSK|1|2|G|416
*
6OSK|1|2|U|427
6OSK|1|2|G|428
6OSK|1|2|U|429
6OSK|1|2|A|430
6OSK|1|2|A|431
6OSK|1|2|A|432
6OSK|1|2|G|433

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4