3D structure

PDB id
6OSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF1 accommodated 70S complex at 60 ms
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GA*UGAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OSK_138 not in the Motif Atlas
Homologous match to IL_5J7L_031
Geometric discrepancy: 0.0785
The information below is about IL_5J7L_031
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
Major groove platform
Motif group
IL_50694.7
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

6OSK|1|2|G|654
6OSK|1|2|A|655
*
6OSK|1|2|U|751
6OSK|1|2|G|752
6OSK|1|2|A|753
6OSK|1|2|C|754

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain m
30S ribosomal protein S8
Chain t
30S ribosomal protein S15

Coloring options:


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