3D structure

PDB id
6OSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF1 accommodated 70S complex at 60 ms
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GU(5MC)AC*GAAGUC
Length
11 nucleotides
Bulged bases
6OSK|1|2|A|1492, 6OSK|1|2|A|1493
QA status
Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OSK_166 not in the Motif Atlas
Homologous match to IL_4LFB_058
Geometric discrepancy: 0.4894
The information below is about IL_4LFB_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6OSK|1|2|G|1405
6OSK|1|2|U|1406
6OSK|1|2|5MC|1407
6OSK|1|2|A|1408
6OSK|1|2|C|1409
*
6OSK|1|2|G|1491
6OSK|1|2|A|1492
6OSK|1|2|A|1493
6OSK|1|2|G|1494
6OSK|1|2|U|1495
6OSK|1|2|C|1496

Current chains

Chain 2
16S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain 4
mRNA
Chain 5
Transfer RNA; tRNA
Chain A
Peptide chain release factor 1
Chain q
30S ribosomal protein S12

Coloring options:


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