3D structure

PDB id
6OSK (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF1 accommodated 70S complex at 60 ms
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
CG*UAG
Length
5 nucleotides
Bulged bases
6OSK|1|3|A|66
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OSK_172 not in the Motif Atlas
Homologous match to IL_4WF9_112
Geometric discrepancy: 0.1908
The information below is about IL_4WF9_112
Detailed Annotation
Major groove intercalation
Broad Annotation
Major groove intercalation
Motif group
IL_31462.6
Basepair signature
cWW-L-cWW
Number of instances in this motif group
130

Unit IDs

6OSK|1|3|C|17
6OSK|1|3|G|18
*
6OSK|1|3|U|65
6OSK|1|3|A|66
6OSK|1|3|G|67

Current chains

Chain 3
5S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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