IL_6OSQ_123

3D structure

PDB id

6OSQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF1 accommodated state bound Release complex 70S at long incubation time point

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OSQ_123 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.0953

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6OSQ|1|2|U|409
6OSQ|1|2|G|410
6OSQ|1|2|A|411
6OSQ|1|2|A|412
6OSQ|1|2|G|413
6OSQ|1|2|A|414
6OSQ|1|2|A|415
6OSQ|1|2|G|416
*
6OSQ|1|2|U|427
6OSQ|1|2|G|428
6OSQ|1|2|U|429
6OSQ|1|2|A|430
6OSQ|1|2|A|431
6OSQ|1|2|A|432
6OSQ|1|2|G|433

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4