IL_6OT3_124

3D structure

PDB id

6OT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound Release complex 70S at 24 ms

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OT3_124 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1412

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6OT3|1|2|U|409
6OT3|1|2|G|410
6OT3|1|2|A|411
6OT3|1|2|A|412
6OT3|1|2|G|413
6OT3|1|2|A|414
6OT3|1|2|A|415
6OT3|1|2|G|416
*
6OT3|1|2|U|427
6OT3|1|2|G|428
6OT3|1|2|U|429
6OT3|1|2|A|430
6OT3|1|2|A|431
6OT3|1|2|A|432
6OT3|1|2|G|433

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4