IL_6OTR_018

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GGACG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OTR_018 not in the Motif Atlas

Geometric match to IL_4LFB_018

Geometric discrepancy: 0.1156

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6OTR|1|QA|G|446
6OTR|1|QA|G|447
6OTR|1|QA|A|448
6OTR|1|QA|C|449
6OTR|1|QA|G|450
*
6OTR|1|QA|C|483
6OTR|1|QA|G|484
6OTR|1|QA|G|485
6OTR|1|QA|U|486
6OTR|1|QA|A|487
6OTR|1|QA|C|488

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QP

30S ribosomal protein S16

Chain YI

50S ribosomal protein L9