IL_6OTR_068

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OTR_068 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0586

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6OTR|1|RA|U|239
6OTR|1|RA|G|240
6OTR|1|RA|A|241
6OTR|1|RA|G|242
6OTR|1|RA|U|243
6OTR|1|RA|A|244
6OTR|1|RA|G|245
*
6OTR|1|RA|C|253
6OTR|1|RA|G|254
6OTR|1|RA|A|255
6OTR|1|RA|A|256
6OTR|1|RA|A|257
6OTR|1|RA|G|258

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R8

50S ribosomal protein L35

Chain RP

50S ribosomal protein L15