IL_6OTR_110
3D structure
- PDB id
- 6OTR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- AUGAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OTR_110 not in the Motif Atlas
- Homologous match to IL_7RQB_049
- Geometric discrepancy: 0.0677
- The information below is about IL_7RQB_049
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.7
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6OTR|1|RA|A|1262
6OTR|1|RA|U|1263
6OTR|1|RA|G|1264
6OTR|1|RA|A|1265
6OTR|1|RA|G|1266
6OTR|1|RA|U|1267
6OTR|1|RA|A|1268
6OTR|1|RA|A|1269
*
6OTR|1|RA|U|2011
6OTR|1|RA|G|2012
6OTR|1|RA|A|2013
6OTR|1|RA|A|2014
6OTR|1|RA|A|2015
6OTR|1|RA|U|2016
6OTR|1|RA|U|2017
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R5
- 50S ribosomal protein L32
- Chain RF
- 50S ribosomal protein L4
- Chain RR
- 50S ribosomal protein L17
- Chain RW
- 50S ribosomal protein L22
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