IL_6OTR_116

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

6OTR|1|RA|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OTR_116 not in the Motif Atlas

Homologous match to IL_5J7L_295

Geometric discrepancy: 0.119

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6OTR|1|RA|C|1417
6OTR|1|RA|G|1418
6OTR|1|RA|A|1419
6OTR|1|RA|U|1420
6OTR|1|RA|G|1421
*
6OTR|1|RA|C|1577
6OTR|1|RA|U|1578
6OTR|1|RA|A|1579
6OTR|1|RA|A|1580
6OTR|1|RA|G|1581

Current chains

Chain RA

23S rRNA

Nearby chains