IL_6OTR_125

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OTR_125 not in the Motif Atlas

Homologous match to IL_7A0S_059

Geometric discrepancy: 0.0819

The information below is about IL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.5

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

6OTR|1|RA|G|1651
6OTR|1|RA|A|1652
6OTR|1|RA|G|1653
6OTR|1|RA|A|1654
6OTR|1|RA|A|1655
6OTR|1|RA|C|1656
*
6OTR|1|RA|G|2004
6OTR|1|RA|A|2005
6OTR|1|RA|C|2006

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RR

50S ribosomal protein L17