IL_6OTR_151

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OTR_151 not in the Motif Atlas

Homologous match to IL_7A0S_082

Geometric discrepancy: 0.3261

The information below is about IL_7A0S_082

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.7

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

40

Unit IDs

6OTR|1|RA|U|2401
6OTR|1|RA|C|2402
6OTR|1|RA|C|2403
*
6OTR|1|RA|G|2414
6OTR|1|RA|G|2415

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R1

50S ribosomal protein L28

Chain R6

50S ribosomal protein L33

Chain R8

50S ribosomal protein L35

Chain RP

50S ribosomal protein L15