3D structure

PDB id
6OTR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
Experimental method
X-RAY DIFFRACTION
Resolution
3.12 Å

Loop

Sequence
GGAAGAAG*UGUAAAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OTR_192 not in the Motif Atlas
Homologous match to IL_4LFB_017
Geometric discrepancy: 0.1095
The information below is about IL_4LFB_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_62329.1
Basepair signature
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW
Number of instances in this motif group
2

Unit IDs

6OTR|1|XA|G|409
6OTR|1|XA|G|410
6OTR|1|XA|A|411
6OTR|1|XA|A|412
6OTR|1|XA|G|413
6OTR|1|XA|A|414
6OTR|1|XA|A|415
6OTR|1|XA|G|416
*
6OTR|1|XA|U|427
6OTR|1|XA|G|428
6OTR|1|XA|U|429
6OTR|1|XA|A|430
6OTR|1|XA|A|431
6OTR|1|XA|A|432
6OTR|1|XA|C|433

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XD
30S ribosomal protein S4

Coloring options:


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