IL_6OTR_228

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6OTR|1|XA|C|1400, 6OTR|1|XA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OTR_228 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.0748

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6OTR|1|XA|C|1399
6OTR|1|XA|C|1400
6OTR|1|XA|G|1401
*
6OTR|1|XA|C|1501
6OTR|1|XA|A|1502
6OTR|1|XA|A|1503
6OTR|1|XA|G|1504

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XV

Transfer RNA; tRNA

Chain XX

mRNA