IL_6OTR_297

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OTR_297 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.1311

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6OTR|1|YA|A|1469
6OTR|1|YA|G|1470
6OTR|1|YA|A|1471
6OTR|1|YA|A|1472
6OTR|1|YA|G|1473
*
6OTR|1|YA|U|1520
6OTR|1|YA|G|1521
6OTR|1|YA|G|1522
6OTR|1|YA|U|1523

Current chains

Chain YA

23S rRNA

Nearby chains