IL_6OTR_339
3D structure
- PDB id
- 6OTR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.12 Å
Loop
- Sequence
- CUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6OTR_339 not in the Motif Atlas
- Geometric match to IL_4WF9_100
- Geometric discrepancy: 0.1596
- The information below is about IL_4WF9_100
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.5
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6OTR|1|YA|C|2652
6OTR|1|YA|U|2653
6OTR|1|YA|A|2654
6OTR|1|YA|G|2655
6OTR|1|YA|U|2656
6OTR|1|YA|A|2657
6OTR|1|YA|C|2658
*
6OTR|1|YA|G|2663
6OTR|1|YA|G|2664
6OTR|1|YA|A|2665
6OTR|1|YA|C|2666
6OTR|1|YA|C|2667
6OTR|1|YA|G|2668
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YH
- 50S ribosomal protein L6
Coloring options: