IL_6OTR_362

3D structure

PDB id

6OTR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S post-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OTR_362 not in the Motif Atlas

Homologous match to IL_5J7L_052

Geometric discrepancy: 0.5762

The information below is about IL_5J7L_052

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

6OTR|1|QA|C|1129
6OTR|1|QA|A|1130
6OTR|1|QA|G|1131
6OTR|1|QA|C|1132
*
6OTR|1|QA|G|1142
6OTR|1|QA|G|1143

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QI

30S ribosomal protein S9