3D structure

PDB id
6OUO (explore in PDB, NAKB, or RNA 3D Hub)
Description
RF2 accommodated state bound 70S complex at long incubation time
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
6OUO|1|1|A|1127, 6OUO|1|1|U|1130
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6OUO_036 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.1128
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

6OUO|1|1|G|1024
6OUO|1|1|G|1025
6OUO|1|1|G|1026
6OUO|1|1|A|1027
6OUO|1|1|A|1028
6OUO|1|1|A|1029
6OUO|1|1|C|1030
*
6OUO|1|1|G|1124
6OUO|1|1|G|1125
6OUO|1|1|A|1126
6OUO|1|1|A|1127
6OUO|1|1|G|1128
6OUO|1|1|A|1129
6OUO|1|1|U|1130
6OUO|1|1|G|1131
6OUO|1|1|U|1132
6OUO|1|1|A|1133
6OUO|1|1|A|1134
6OUO|1|1|C|1135
6OUO|1|1|G|1136
6OUO|1|1|G|1137
6OUO|1|1|G|1138
6OUO|1|1|G|1139
6OUO|1|1|C|1140

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L3
Chain J
50S ribosomal protein L13
Chain M
50S ribosomal protein L16
Chain f
50S ribosomal protein L36

Coloring options:


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