IL_6OUO_124

3D structure

PDB id

6OUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

RF2 accommodated state bound 70S complex at long incubation time

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OUO_124 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1412

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6OUO|1|2|U|409
6OUO|1|2|G|410
6OUO|1|2|A|411
6OUO|1|2|A|412
6OUO|1|2|G|413
6OUO|1|2|A|414
6OUO|1|2|A|415
6OUO|1|2|G|416
*
6OUO|1|2|U|427
6OUO|1|2|G|428
6OUO|1|2|U|429
6OUO|1|2|A|430
6OUO|1|2|A|431
6OUO|1|2|A|432
6OUO|1|2|G|433

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S4