IL_6OXA_041

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

6OXA|1|QA|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_041 not in the Motif Atlas

Homologous match to IL_6CZR_152

Geometric discrepancy: 0.124

The information below is about IL_6CZR_152

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OXA|1|QA|G|1048
6OXA|1|QA|U|1049
6OXA|1|QA|G|1050
*
6OXA|1|QA|C|1208
6OXA|1|QA|C|1209

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QN

30S ribosomal protein S14 type Z

Chain QY

Addiction module toxin, Txe/YoeB family