IL_6OXA_046

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUUGC*GCACUC

Length

11 nucleotides

Bulged bases

6OXA|1|QA|U|1125, 6OXA|1|QA|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6OXA|1|QA|G|1124
6OXA|1|QA|U|1125
6OXA|1|QA|U|1126
6OXA|1|QA|G|1127
6OXA|1|QA|C|1128
*
6OXA|1|QA|G|1144
6OXA|1|QA|C|1145
6OXA|1|QA|A|1146
6OXA|1|QA|C|1147
6OXA|1|QA|U|1148
6OXA|1|QA|C|1149

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QI

30S ribosomal protein S9

Chain QJ

30S ribosomal protein S10