IL_6OXA_079

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6OXA|1|RA|G|801, 6OXA|1|RA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_079 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.0921

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6OXA|1|RA|G|674
6OXA|1|RA|A|675
6OXA|1|RA|A|676
6OXA|1|RA|A|677
6OXA|1|RA|C|678
*
6OXA|1|RA|G|799
6OXA|1|RA|A|800
6OXA|1|RA|G|801
6OXA|1|RA|A|802
6OXA|1|RA|U|803
6OXA|1|RA|A|804
6OXA|1|RA|G|805
6OXA|1|RA|C|806

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RF

50S ribosomal protein L4

Chain RP

50S ribosomal protein L15