IL_6OXA_086

3D structure

PDB id

6OXA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dimeric E.coli YoeB bound to Thermus thermophilus 70S pre-cleavage (AAU)

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

6OXA|1|RA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6OXA_086 not in the Motif Atlas

Geometric match to IL_7RQB_025

Geometric discrepancy: 0.2838

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

6OXA|1|RA|C|844
6OXA|1|RA|G|845
6OXA|1|RA|C|846
*
6OXA|1|RA|G|931
6OXA|1|RA|G|932
6OXA|1|RA|A|933
6OXA|1|RA|G|934

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R3

50S ribosomal protein L30